オープンソース のバイオインフォマティックスのソフトウェア の一覧。 名称 説明 プラットフォーム ライセンス 開発元 .NET Bio A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists. .NET Framework Apache License Collaborative project AMPHORA Metagenomics analysis software Linux GNU General Public License Developer Anduril Component-based workflow framework for data analysis Linux, Mac OS X, Windows GPL University of Helsinki AutoDock suite of automated docking tools Platform GNU GPL Developer Biochemical Algorithms Library (BALL) C++ library and framework for molecular modeling and visualization designed for rapid prototyping Linux, Mac OS X, Windows LGPL BALL project team Bioclipse Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Platform Eclipse Public License The Bioclipse Project Bioconductor R (programming language) language toolkit Linux, Mac OS X, Windows Artistic License 2.0 Fred Hutchinson Cancer Research Center BioJava Java (programming language) Linux, Mac OS X, Windows LGPL v2.1 Open Bioinformatics Foundation BioJS Javascript Web Apache License - BioMOBY registry of web services Web Artistic License Open Bioinformatics Foundation BioPerl Perl language toolkit Cross-platform Artistic License & GPL Open Bioinformatics Foundation BioPHP PHP language toolkit Platform GPL v2 Open Bioinformatics Foundation Biopython Python language toolkit Cross-platform Biopython License Open Bioinformatics Foundation BioRuby Ruby language toolkit Platform GNU GPL v2 or Ruby license Open Bioinformatics Foundation EMBOSS Suite of packages for sequencing, searching, etc. Platform General Public Licence (GPL) and Library GPL Collaborative project Galaxy Scientific workflow and data integration system Unix-like Academic Free License Penn State and Emory University GenePattern Scientific workflow system that provides access to more than 150 genomic analysis tools Unix-like (public server); Linux, Mac OS X, Windows MIT license Broad Institute GeWorkbench Genomic data integration platform Linux, Mac OS X, Windows License Columbia University GMOD Toolkit for addressing many common challenges at biological databases. Unix-like (server), Web browser (client) Varies depending on tool Collaborative project GenGIS Application that allows users to combine digital map data with information about biological sequences collected from the environment. Windows, Mac OS X GPL Collaborative project GenomeSpace Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Web browser LGPL Broad Institute, Collaborative project GENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Platform GPL Magnus Manske Integrated Genome Browser Java-based desktop genome browser Linux, Mac OS X, Windows CPL 1.0 GenoViz InterMine Extensive data warehouse system for the analysis and integration of biological datasets Cross-platform LGPL University of Cambridge LabKey Server Open-source software platform that allows organizations to integrate, analyze and share complex biomedical data Linux, Mac OS X, Windows Apache License LabKey Software Foundation mothur Software for analysis of the 16S rRNA gene Linux, Mac OS X, Windows The University of Michigan PathVisio a desktop software for drawing, analysis and visualization of biological pathways Linux, Mac OS X, Windows Apache 2.0 License Maastricht University Orange a component-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting Linux, Mac OS X, Windows GPL University of Ljubljana Staden Package Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin. Linux, Mac OS X, Windows BSD Wellcome Trust Sanger Institute / Medical Research Council Taverna workbench Tool for designing and executing workflows Linux, Mac OS X, Windows LGPL myGrid UGENE integrated bioinformatics tools Linux, Mac OS X, Windows GPL2 Unipro Unipept Metaproteomics biodiversity analysis Web browser MIT License Ghent University
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外部リンク Free Biology Software - Free Software Directory (フリーソフトウェア財団)